
This almond flour lemon blueberry muffin recipe brings the perfect balance of zesty citrus and sweet berries to your breakfast table. With a light, fluffy texture that will surprise you, these muffins have become my go-to when I want something that feels indulgent but stays within my clean eating guidelines.
I first developed this recipe during a spring morning when blueberries were abundant at our local farmers market. My family now requests these muffins weekly, especially my daughter who claims they make her feel like she's eating dessert for breakfast.
Ingredients
- Almond flour fine organic variety provides the perfect texture and subtle nutty flavor
- Salt balances the sweetness and enhances the lemon flavor
- Monk fruit optional natural sweetener that adds sweetness without the sugar spike
- Baking powder gives these muffins their impressive rise despite being gluten free
- Lemon zest fresh zest provides vibrant citrus notes that make these muffins special
- Eggs large organic eggs provide structure and richness
- Greek yogurt adds moisture and tanginess that complements the lemon
- Maple syrup natural sweetener that adds depth of flavor beyond just sweetness
- Blueberries fresh berries work best as they maintain their shape during baking
Step-by-Step Instructions
- Prepare Your Station
- Preheat your oven to 350°F and line a standard muffin tin with 12 liners. This preparation ensures you can quickly get your batter into the oven once mixed, maximizing the effectiveness of the baking powder.
- Mix Dry Ingredients
- In a large bowl, thoroughly whisk together the almond flour, monk fruit, salt, lemon zest, and baking powder. The lemon zest should be evenly distributed throughout to ensure consistent flavor in every bite.
- Combine Wet Ingredients
- Add Greek yogurt, maple syrup, and eggs to your dry mixture. Mix until just combined, being careful not to overmix which can make your muffins dense rather than fluffy. The batter should be somewhat thick but pourable.
- Add Blueberries
- Gently fold in the blueberries using a spatula with a light hand. This prevents crushing the berries which would cause purple streaking throughout your batter and potentially make the muffins soggy.
- Fill Muffin Cups
- Divide the batter evenly among the prepared muffin cups, filling each about three quarters full. This provides room for the muffins to rise properly without overflowing.
- Bake To Perfection
- Bake for 20 minutes or until the centers are set and a toothpick inserted comes out clean. The tops should be golden brown and slightly springy when touched.

The lemon zest is truly the secret ingredient that elevates these muffins. I discovered its importance by accident when I doubled the amount one morning. The bright citrus notes created such a wonderful contrast to the sweet blueberries that I never went back to the original amount. My husband now says he can tell when I skimp on the zest!
Storage Solutions
These muffins stay fresh at room temperature in an airtight container for up to 3 days. The almond flour keeps them moist longer than traditional flour muffins. For longer storage, refrigerate for up to a week or freeze for up to three months. I often make a double batch specifically to freeze for quick breakfasts. Allow frozen muffins to thaw overnight in the refrigerator or quickly reheat in the microwave for 20-30 seconds.
Perfect Pairings
These muffins shine when served alongside a protein source like Greek yogurt or eggs for a complete breakfast. For an afternoon treat, pair with a cup of chamomile or Earl Grey tea which complements the lemon notes beautifully. During summer months, I serve these slightly warmed with a small scoop of coconut milk ice cream for a delightful dessert that still maintains their healthful profile.
Making Them Dairy Free
Creating a dairy free version is simple and equally delicious. Replace the Greek yogurt with coconut yogurt or almond milk yogurt in the same quantity. The texture may be slightly different but the flavor remains exceptional. If using coconut yogurt, choose an unsweetened variety to maintain the proper sweetness balance. I regularly make both versions depending on which guests are joining us for brunch.
Recipe Q&A
- → Can I use frozen blueberries instead of fresh?
Yes, you can use frozen blueberries, though fresh ones yield the best texture. If using frozen, don't thaw them first as they'll bleed into the batter. Add them directly from the freezer and you may need to increase baking time by 2-3 minutes.
- → How do I make these muffins dairy-free?
Simply substitute the Greek yogurt with your favorite dairy-free yogurt alternative. Coconut, almond, or soy-based yogurts work well. Ensure it's plain and unsweetened to maintain the intended flavor profile.
- → How should I store these muffins?
Store in an airtight container at room temperature for 2-3 days or refrigerate for up to a week. They also freeze beautifully for up to 3 months. Thaw at room temperature or reheat briefly in the microwave before serving.
- → Can I substitute the monk fruit sweetener?
Yes, you can use coconut sugar, erythritol, or stevia as alternatives to monk fruit. The monk fruit is optional for additional sweetness, so you can omit it entirely if you prefer less sweet muffins.
- → Is it possible to make these muffins without eggs?
While not tested with this specific formula, you might try using flax eggs (1 tablespoon ground flaxseed mixed with 3 tablespoons water per egg). However, the texture may be denser as eggs provide significant structure to almond flour baked goods.
- → Can I add other flavors to these muffins?
Absolutely! Try adding 1/2 teaspoon almond extract, 1/4 cup chopped nuts, or substitute the blueberries with raspberries or blackberries. A teaspoon of poppy seeds also pairs wonderfully with the lemon flavor.